Close this search box.
Person using a microscope

How to Study Mushrooms and Spores Using a Microscope

Table of Contents

The term ‘microscopy’ refers to using a microscope to study objects that cannot be seen with the human eye. Mushrooms and their spores are just one of the many organisms you can study using a microscope.

With practice and the correct technique, mushroom microscopy allows us to visualize fungal spores and other mushroom micro-structures. Aside from simply viewing, microscopic analysis has given us the ability to identify, measure, and photograph spores and mushrooms like never before.

If you’re new to microscopy, this article will teach you which equipment you need, how to use a microscope, and how to study mushrooms and their spores.

Equipment Needed to Begin Mushroom Microscopy


  • Slides
  • Microscope
  • Coverslips
  • Lens tissues
  • Immersion oil
  • Mushroom spores
  • Sharp razor blades
  • Extra illuminator bulbs
  • Oil-immersion lens
  • Chemicals and stains

New microscopes can be quite expensive, if you’re on a budget try finding a decent used one. Check your local universities and laboratories to see if they are willing to sell you old equipment.

Most of the other supplies needed here can be sourced locally or online. For lens paper, you can try your local camera shop or optometrist. Finding the chemicals needed for staining may prove challenging, I will touch on chemicals below.

To begin mushroom microscopy you can expect to spend $500 between $700. If you can find a quality microscope for a really good deal it will dramatically lower your total cost.

Microscopy reagents, stains, chemicals, slides, coverslipes

Best Microscope and Magnification for Studying Mushroom Spores?

A microscope capable of 1000x magnification with an oil immersion lens will be suitable to examine mushrooms and their spores. 

Additionally, the microscope should have a fine-focus knob, the ability to move its stage, and an electric light source. Also, make sure the eyepiece has an ocular micrometer in it so you can measure objects.

Microscope parts

Microscope Calibration

To properly calibrate a microscope you will need a special slide called a ‘stage micrometer’. Now compare the units in your microscope’s eyepiece measuring system to the predetermined units on the stage micrometer. Now that you have a conversion basis, each time you measure something you may need to apply the conversion unless you find that your conversion is 1:1.

Chemicals, Reagents, and Stains

Without the use of stains and reagents, it will be hard to see many of your study specimens’ features. Unfortunately sourcing the chemicals required for mycological microscopy will be challenging. 

KOH (potassium hydroxide)

KOH is used as a mounting medium for the microscopic examination of fungi. This chemical can help make tissues and structures visible. With a bit of luck and hunting you should be able to find KOH through online vendors.


This stain is quite easy to find and is also available through online retailers. Phloxine is a red stain that’s good at making structures more visible.

Melzer’s reagent

In mushroom microscopy, Melzer’s reagent is used to determine whether spores and tissues are amyloid, inamyloid, or dextrinoid.

Unfortunately, Melzer’s contains chloral hydrate, which is a controlled substance making it extremely difficult to source. It also contains water, iodine, and potassium iodide, which are all quite easy to obtain. 

You can start by checking with your local professional mycologists, but even they may have trouble obtaining Melzer’s, so they may not be willing to give/sell you any. The next best option is to try to explain to your doctor why you need a prescription for chloral hydrate, which will be interesting considering chloral hydrate can be used as a date rape drug. Alternatively, you could ask for a prescription of Melzer’s reagent itself, which a pharmacist could mix for you given the correct formula instructed by your doctor on the prescription. 

Sourcing Mushroom Spores

Mushroom spores can be purchased from various online vendors or mycologists you may know personally. Luckily we are one of the industries leading spore vendors with many years of experience in mycology. We have a wide selection of mushroom spore syringes to choose from and we are continuously adding them to our inventory. All of our spore strains are refined and tested before ever making them available to the public. Rest assured we offer nothing but the best quality products.

Mushroom spore syringe close up by Planet Spores
Planet Spores mushroom spore syringe.

Spore Syringe vs Spore Print for Microscopy

Mushroom spore syringes provide the easiest route to microscopic examination because the spores are already hydrated and suspended in distilled water. Now, all that’s left to do is inject spore solution onto a microscope slide and add your desired stains to increase visibility.

Examining spores from a spore print involves a similar process, except instead of injecting the spores, one must scrap the spores from the print onto the microscope slide and add stains.

For those of you who would rather make your own syringes or prints rather than purchase them, we have guides for you.

Read: How to Make Mushroom Spore Syringes

Read: How to Make Mushroom Spore Prints

How to View Mushroom Spores Step-by-Step

The most common microscopy technique to visualize fungi and their spores is to start from low magnification and progressively increase to high magnification. If you start with your highest magnification it will be difficult to find the spores because they are so tiny. 

1. Transfer spores to a microscopy slide

From spore prints, scrap some spores onto your razor blade, then tap the spore dust off the blade, onto a slide. From spore syringes, simply inject spore solution onto a slide.

2. Add staining

Add a drop of KOH or Melzer’s reagent onto the slide of spores.

3. Add a coverslip

Add a coverslip, and gently tap on the coverslip with a small object to remove any air bubbles.

4. Secure the slide on the stage

Place the slide on your microscope’s stage and begin with low magnification.

5. Move through magnifications

The spores may still be very tiny, for this reason, you will need to progressively move through your magnifications, bringing the spores into focus each time.

6. Oil-immersion lens

Before moving to the highest magnification (oil-immersion lens), add a drop of immersion oil to the top of the coverslip.

7. Bring the spore to full focus

Carefully adjust the coarse focus knob until the spores are almost in focus, then adjust the fine focus knob to make the spores completely visible.

Microscope close up

Tip: If you are trying to identify a mushroom species by examining its spores, you must use Melzer’s reagent in step 2. Melzer’s will make it possible to determine whether the spores are amyloid, inamyloid, or dextrinoid which is essential in the identification process. 

How to Measure Mushroom Spores

Use the ruler in your eyepiece to measure spores, remember to convert the values to microns using the conversion basis you established while calibrating your microscope. To get a general understanding of how large the spores are you will need to take multiple measurements. In most cases, 10 to 20 measurements should be enough.

Measured mushroom spores
Mushroom spores magnified and measured.

Tip: Ensure the spores are in full focus before taking any measurements.

Mycology Microscopy Images 1000x Magnified Using a Microscope

A – Basidiospores, B – Basidia, C – Pileus context, D – Hyphae
Mold Spores under a microscope
Mold spores magnified.
Basidia and Basidiospores magnified under a microscope
Basidia and Basidiospores magnified, this area is part of the mushroom’s gills.
Mushroom mycelium magnified under a microscope
Mushroom mycelium magnified.
Various mushroom spores magnified under a microscope
Various mushroom spores magnified.


Now that you know how to examine and measure mushroom spores under a microscope you can easily identify specific mushroom species by viewing, measuring, documenting, and photographing your favorite strains.

The key to successful spore microscopy starts with a good 1000x magnification microscope with an oil immersion lens. It’s critical to begin your studies at low magnification and progressively increase to high magnification to find the tiny mushroom spores.

Picture of About the Author: Tyler Johnson
About the Author: Tyler Johnson

What began as foraging for mushrooms deep in the woods as a child has graduated to growing mushrooms, eating, cloning, writing, and now spreading the love of mushrooms to the world.

Get The Latest Updates
Subscribe To Our Newsletter

Be the first to know when your favorite products go on sale, when new products are released, and when we publish new guides.

Social Media
Most Popular
Related Posts